Publications

Selected journal papers

• Musilova, J., Vafek, Z., Puniya, B. L., Zimmer, R., Helikar, T., and Sedlar, K. (2024) ‘Augusta: From RNA‐Seq to gene regulatory networks and Boolean models’, Computational and Structural Biotechnology Journal. DOI: 10.1016/j.csbj.2024.01.013
• Hrabalova, V., Opial, T., Musilova, J., Sedlar, K., and Obruca, S. (2024) ‘Biotransformation of ferulic acid into vanillyl alcohol and vanillic acid employing thermophilic bacterium Caldimonas thermodepolymerans’, Enzyme and Microbial Technology. DOI: 10.1016/j.enzmictec.2024.110475
• Koublova, V., Sedlar, K., Sedlacek, I., Musilova, J., Stankova, E., Kralova, S., Koudelkova, S., Krsek, D., and Svec, P. (2024) ‘Corynebacterium mendelii sp. nov., a novel bacterium isolated from Adélie penguin oral cavity’, International Journal of Systematic and Evolutionary Microbiology. DOI: 10.1099/ijsem.0.006244
• Musilova, J., Kourilova, X., Hermankova, K., Bezdicek, M., Ieremenko, A., Dvorak, P., Obruca, S., and Sedlar, K. (2023) ‘Genomic and phenotypic comparison of polyhydroxyalkanoates producing strains of genus Caldimonas/Schlegelella’, Computational and Structural Biotechnology Journal. DOI: 10.1016/j.csbj.2023.10.051
• Rehakova, V., Pernicova, I., Kourilova, X., Sedlacek, P., Musilova, J., Sedlar, K., Koller, M., Kalina, M., and Obruca, S. (2023) ‘Biosynthesis of versatile PHA copolymers by thermophilic members of the genus Aneurinibacillus’, International Journal of Biological Macromolecules. DOI: 10.1016/j.ijbiomac.2022.11.215
• Svec, P., Busse, H.-J., Sedlar, K., Musilová, J., Kralová, S., Stanková, E., Sedo, O., Krsek, D., Koublova, V., and Kristofova, L. (2023) ‘Corynebacterium antarcticum sp. nov., Corynebacterium marambiense sp. nov., Corynebacterium meridianum sp. nov., and Corynebacterium pygosceleis sp. nov., isolated from Adélie penguins (Pygoscelis adeliae)’, Systematic and Applied Microbiology. DOI: 10.1016/j.syapm.2022.126390
• Patakova, P., Branska, B., Vasylkivska, M., Jureckova, K., Musilova, J., Provaznik, I., Sedlar, K. (2022) ‘Transcriptomic studies of solventogenic clostridia, Clostridium acetobutylicum and Clostridium beijerinckii’, Biotechnology Advances. DOI: 10.1016/j.biotechadv.2021.107889
• Musilova, J., Kourilova, X., Pernicova, I., Bezdicek, M., Lengerova, M., Obruca, S., and Sedlar, K. (2022) ‘Novel thermophilic polyhydroxyalkanoates producing strain Aneurinibacillus thermoaerophilus CCM 8960’, Applied Microbiology and Biotechnology. DOI: 10.1007/s00253-022-12039-1
• Musilova, J. and Sedlar, K. (2021) ‘Tools for time-course simulation in systems biology: a brief overview’, Briefings in Bioinformatics. DOI: 10.1093/bib/bbaa392
• Musilova, J., Kourilova, X., Bezdicek, M., Lengerova, M., Obruca, S., Skutkova, H., and Sedlar, K. (2021) ‘First Complete Genome of the Thermophilic Polyhydroxyalkanoates-Producing Bacterium Schlegelella thermodepolymerans DSM 15344’, Genome Biology and Evolution. DOI: 10.1093/gbe/evab007
• Sedlar, K., Vasylkivska, M., Musilova, J., Branska, B., Provaznik, I., and Patakova, P. (2020) ‘Phenotypic and genomic analysis of isopropanol and 1,3-propanediol producer Clostridium diolis DSM 15410’, Genomics. DOI: 10.1016/j.ygeno.2020.11.007
• Kourilova, X., Pernicova, I., Sedlar, K., Musilova, J., Sedlacek, P., Kalina, M., Koller, M., and Obruca, S. (2020) ‘Production of polyhydroxyalkanoates (PHA) by a thermophilic strain of Schlegelella thermodepolymerans from xylose rich substrates’, Bioresource Technology. DOI: 10.1016/j.biortech.2020.123885

Selected conference papers

• Musilova, J. Pathways identification in the gram-positive bacterium Aneurinibacillus species H1. In Proceeding II of the 27th Conference STUDENT EEICT 2021. Brno: Brno University of Technology, Faculty of Electrical Engineering and Communication, 2021. p. 111-115. ISBN: 978-80-214-5943-4.
• Musilova, J., Kourilova, X., Obruca, S., Sedlar, K., Lengerova, M., Bezdicek, M. Potential functional capacity of a non-model organism Aneurinibacillus species H1. BioTech 2020 & 8th Czech-Swiss Symposium with Exhibition - Abstracts. 2021. p. 91. ISBN: 978-80-7592-092-8.
• Schwarzerova, J., Musilova, J., Jureckova, K., Branska, B., Provaznik, I., PAtakova, P., and Sedlar, K. Operon Structure Inference in Clostridium beijerinckii NRRL B-589 using RNA-Seq. In 8th International Conference on Chemical Technology. 2021. p. 284-289. ISBN: 978-80-88307-08-2.
• Kourilova, X., Pernicova, I., Musilova, J., Sedlar, K., and Obruca, S. Screening cultivation mode and production of the new bacterium Aneurinibacillus thermoaerophilus CCM 8960. The Eurobiotech Journal. Sciendo, 2021. p. 98.
• Musilova, J. HOMOLOGSEARCH: R Package for Identyfying Homologous Sequences between Model and Non-model Organisms. In Proceeding I of the 26th Conference STUDENT EEICT 2020. Brno: Brno University of Technology, Faculty of Electrical Engineering and Communication, 2020. p. 334-338. ISBN: 978-80-214-5867-3.
• Kourilova, X., Musilova, J., Sedlar, K., Bednarova, K., Pernicova, I., and Obruca, S. Thermophilic Bacterium Schlegelella thermodepolymerans DSM 15344 as a Producer of Polyhydroxyalkanoates. Studentská odborná konference CHEMIE JE ŽIVOT 2020. Brno: Brno University of Technology, Faculty of Chemistry, 2020. p. 90-91. ISBN: 978-80-214-5920-0.
• Musilova, J., Jureckova, K., Kolek, J., Provaznik, I., Patakova, P., and Sedlar, K. Signaling Pathway for Butanol Production in Clostridium beijerinckii NRRL B-598. In 7th International Conference on Chemical Technology. Mikulov, 2019. ISBN: 978-80-88307-01-3.
• Musilova, J. Signaling Pathway for Butanol Production in Clostridium beijerinckii NRRL B-598. In Proceedings of the 25th Conference STUDENT EEICT 2019. Brno: Brno University of Technology, Faculty of Electrical Engineering and Communication, 2019. p. 187-190. ISBN: 978-80-214-5735-5.
• Vasylkivska, M., Jureckova, K., Musilova, J., Kolek, J., Branska, B., Sedlar, K., and Patakova, P. Stress response to butyric acid and butanol formation in Clostridium beijerinckii at transcriptional level. Poster, 14th International Symposium on the Genetics of Industrial Microorganisms, Pisa, Italy, 2019. p. 8-11.
• Patakova, P., Vasylkivska, M., Jureckova, K., Musilova, J., Kolek, J., Branska, B., and Sedlar, K. Stress response to butyric acid and butanol formation in Clostridium beijerinckii at transcriptional level. 14th International Symposium on the Genetics of Industrial Microorganisms - Abstracts. Pisa, Italy, 2019. p. 209.
• Musilova, J., Koscova, P. Network Analysis of Proteins Associated with Schizophrenia. In Proceedings of the 24rd Conference STUDENT EEICT 2018. Brno: Brno University of Technology, Faculty of Electrical Engineering and Communication, 2018. p. 273-275. ISBN: 978-80-214-5614-3.
• Musilova, J., Koscova, P. Interakce léčiv užívaných při léčbě schizofrenie. In Proceedings of the 23rd Conference STUDENT EEICT 2017. Brno: Brno University of Technology, Faculty of Electrical Engineering and Communication, 2017. p. 18-20. ISBN: 978-80-214-5496-5.

Thesis

• Musilova, Jana. Advanced methods for genome annotation and functional description of non-model organisms in biotechnology research. 2024. Disseration Thesis. Brno University of Technology, Faculty of Electrical Engineering and Communication, Department of Biomedical Engineering. Advisor: Karel Sedlar.
• Musilova, Jana. Signaling Pathway for Butanol Production in Solventogenic Clostridium Bacteria. 2019. Master's Thesis. Brno University of Technology, Faculty of Electrical Engineering and Communication, Department of Biomedical Engineering. Supervisor: Karel Sedlar.
• Musilova, Jana. Interactions of drugs used to treat schizophrenia and their accompanying symptoms. 2017. Bachelor's Thesis. Brno University of Technology, Faculty of Electrical Engineering and Communication, Department of Biomedical Engineering. Supervisor: Pavlina Cickova.